rtcog documentation

Documentation for rtcog: real-time fMRI monitoring of brain activity and cognitive processes

Contents:

• Overview
  • Purpose and Scope
  • Performance and Architecture
  • The preprocessing engine
  • Experimental Control and Visualization
  • Extensibility and Use Cases
• Installation
  • 1. Clone the repository
  • 2. Install dependencies
  • 3. Create environment
• Usage
  • 1. Update config
  • 2. Real-Time Scanner Setup
  • 3. Running rtcog
  • Command Line Options
  • Outputs
• Customizing Components
  • Creating preprocessing steps
  • Adding matching methods
  • Creating an experiment plugin
• Transcribing
• Simulate an experiment
• API
  • rtcog.processor package
  • rtcog.preproc package
  • rtcog.comm package
  • rtcog.matching package
  • rtcog.controller package
  • rtcog.gui package
  • rtcog.viz package
  • rtcog.hardware_tests package
  • rtcog.utils package